STEP 2) Abudnace of Bacterial Families in Each Samples
2.1) BC03 Top 10 families Abundances
## [1] "Check if all multi-mapping reads has been summarised into the Lowest Common Ancestor:"
## [1] "Number of current readID in BC03 65014"
## [1] "Number of unique readID in BC03 65014"
## # A tibble: 11 x 3
## family Number.Reads Sample
## <chr> <int> <chr>
## 1 Comamonadaceae 30058 BC03
## 2 Spirosomaceae 5408 BC03
## 3 Aeromonadaceae 3854 BC03
## 4 Alteromonadaceae 2836 BC03
## 5 Oxalobacteraceae 2731 BC03
## 6 Erwiniaceae 1986 BC03
## 7 Pseudomonadaceae 1576 BC03
## 8 Arcobacteraceae 1500 BC03
## 9 Rhodocyclaceae 1425 BC03
## 10 Burkholderiaceae 1237 BC03
## 11 Other 12403 BC03
2.1.2) Leptospira in BC03

2.2) BC04 Top 10 families Abundances
## [1] "Check if all multi-mapping reads has been summarised into the Lowest Common Ancestor:"
## [1] "Number of current readID in BC04 65554"
## [1] "Number of unique readID in BC04 65554"
## # A tibble: 1 x 10
## READID TAXAID MAPQ Domain phylum class order species genus family
## <chr> <chr> <dbl> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
## 1 97deda1c-c… CP022538… 0 Bacter… Spiroc… Lept… Lepto… <NA> Lept… Leptos…
## # A tibble: 11 x 3
## family Number.Reads Sample
## <chr> <int> <chr>
## 1 Aeromonadaceae 51893 BC04
## 2 Pseudomonadaceae 3898 BC04
## 3 Chromobacteriaceae 2091 BC04
## 4 Moraxellaceae 1979 BC04
## 5 Comamonadaceae 1872 BC04
## 6 Enterobacteriaceae 897 BC04
## 7 Exiguobacteraceae 689 BC04
## 8 Clostridiaceae 517 BC04
## 9 Bacillaceae 242 BC04
## 10 Alteromonadaceae 168 BC04
## 11 Other 1308 BC04
2.3) BC05 Top 10 families Abundances
2.4) BC06 Top 10 families Abundances
Mapping Profiling Statistics